She may have had some bad experiences in the past and not be happy with handling. I know you are experienced with taming Naomi and I thing this is just a case of gaining her confidence. It may take time and she may be a little cage aggresive too. Can you get her out in a tub or tube and try taking her away from the cage to handle? Instead of putting your hands in can you take the lid off and gently stroke then lift and lay down till she is happy with that then progress from there.
I'm sure you will get there given a little more time