I've always tried to keep a bit of old bedding so that the scent is familiar in the clean cage. But its not unusual for a little bit of a tantrum from a ham, as they usually believe they've put everything how it should be and don't really appreciate our efforts to keep it clean
She should hopefully settle down, but you can always try keeping more old bedding in the cage next time round, or cleaning the cage in parts, to see if shes a bit happier about it that way